Training materials
Difficulty level: Beginner
and Contributors: Alex Ostrovsky or Avans Hogeschool or Cyril Pommier or Daniel Blankenberg or Dr. Scooter Morris or Laura Leroi or Mallory Freeberg
-
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Calling variants in non-diploid systems
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis microgalaxy prokaryote -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote -
hands-on tutorial
Creating Galaxy tools from Conda Through Deployment
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
• beginnerEpigenomics ChIP-seq Epigenetics -
hands-on tutorial
Pre-processing of 10X Single-Cell RNA Datasets
• beginnerTranscriptomics 10x Single Cell -
hands-on tutorial
Differential abundance testing of small RNAs
• beginnerTranscriptomics -
hands-on tutorial
Downstream Single-cell RNA analysis with RaceID
• beginnerTranscriptomics Single Cell -
hands-on tutorial
Text-mining with the SimText toolset
• beginnerStatistics and probability Statistics and machine learning interactive-tools -
hands-on tutorial
CLI basics
• beginnerSoftware engineering Foundations of Data Science bash jupyter-notebook
- 1
- 2