Training materials
Contributors: Alex Ostrovsky or Anton Nekrutenko or Dr. Nils Gehlenborg or Dr. Roland Schwarz or Pratik Jagtap or Saskia Hiltemann
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hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
hands-on tutorial
Hands-on for 'Comparative gene analysis in unannotated genomes' tutorial
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hands-on tutorial
Hands-on for 'From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis' tutorial
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hands-on tutorial
Hands-on for 'Trio Analysis using Synthetic Datasets from RD-Connect GPAP' tutorial
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hands-on tutorial
Hands-on for 'Calling variants in non-diploid systems' tutorial
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hands-on tutorial
Calling very rare variants
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Calling variants in diploid systems
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Hands-on for 'Genomic Data Visualisation with JBrowse' tutorial
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hands-on tutorial
Visualisation with Circos
• beginnerVisualisation -
hands-on tutorial
Set up a Galaxy for Training
• beginnerTeaching and Hosting Galaxy training