Training materials
Difficulty level: Beginner
and Contributors: Alex Ostrovsky or Anatole Chessel or Anna Syme or Anne-Françoise Adam-Blondon or Dave Clements or Derek Wright or Laura Portell Silva or Our list of contributors can be found on our co...
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hands-on tutorial
Large genome assembly and polishing
• beginnerSequence assembly Assembly assembly nanopore polishing -
youtube video, video
Data Management Planning tips
• beginnerData management FAIR data ELIXIR-CONVERGE DMP data management plan research data management FAIR principles DMP tools DMP templates tool template DMP evaluation RDMkit Data Stewardship Wizard DSW Spanish español -
youtube video, video
ELIXIR resources and Data Management Plans tools: RDMkit and Data Stewardship Wizard
• beginnerData management FAIR data ELIXIR-CONVERGE ELIXIR DMP data management plan research data management FAIR principles DMP tools DMP templates tool template DMP evaluation RDMkit Data Stewardship Wizard DSW -
FREE online course
A Practical Guide for SARS-CoV-2 Whole Genome Sequencing Join now
• beginnerSequencing Best Practices quality control Genomics Metagenomics Genomic data library preparation sars-cov-2 covid-19 surveillance -
hands-on tutorial
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Calling variants in non-diploid systems
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis microgalaxy prokaryote -
hands-on tutorial
Genome annotation with Prokka
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Creating Galaxy tools from Conda Through Deployment
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Chloroplast genome assembly
• beginnerSequence assembly Assembly jbrowse1 nanopore plants -
hands-on tutorial
Downstream Single-cell RNA analysis with RaceID
• beginnerTranscriptomics Single Cell