Training materials
Scientific topics: Genomics or High throughput sequencing
and Contributors: Alex Mitchell or Daniel Faria or Data Carpentry or Florian Christoph Sigloch or Helena Rasche or Simon Gladman or Vilem Ded
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hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
datacarpentry/cloud-genomics
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datacarpentry/organization-genomics
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datacarpentry/genomics-r-intro
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datacarpentry/genomics-workshop
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datacarpentry/wrangling-genomics
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datacarpentry/shell-genomics
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hands-on tutorial
M. tuberculosis Variant Analysis
•• intermediateGenetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote tuberculosis -
hands-on tutorial
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Refining Genome Annotations with Apollo (prokaryotes)
•• intermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 gmod jbrowse1 microgalaxy prokaryote
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