Training materials
Contributors: Ajay Pillai or Anna Syme or Anne Fouilloux or Anup Kumar or Chris Evelo or Cristóbal Gallardo or Felix Almonte or John Davis or Michael Ball or Oliver Crook or Pavel Dvorak or Pip Griffin or Prof. Michael J E Sternberg or Vicky Schneider
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hands-on tutorial
Large genome assembly and polishing
• beginnerSequence assembly Assembly assembly nanopore polishing -
hands-on tutorial
Hands-on for 'Visualize EBV cube data with Panoply netCDF viewer' tutorial
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hands-on tutorial
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Visualisation with Circos
• beginnerVisualisation -
hands-on tutorial
Genome annotation with Prokka
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Debugging Galaxy
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Contributing a New Feature to Galaxy Core
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Writing Automated Tests for Galaxy
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Chloroplast genome assembly
• beginnerSequence assembly Assembly jbrowse1 nanopore plants -
hands-on tutorial
VGP assembly pipeline: Step by Step
•• intermediateSequence assembly Assembly VGP eukaryote pacbio