Training materials
Scientific topics: Computer programming
and Contributors: John Sundh or Eija Korpelainen or Fotis E. Psomopoulos or Matthias Fahrner or Nicola Soranzo or UC Davis Bioinformatics Core Training Page or Vivek Bhardwaj
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hands-on tutorial
Version Control with Git
• beginnerSoftware engineering Foundations of Data Science -
hands-on tutorial
Variant Calling Workflow
• beginnerSoftware engineering Foundations of Data Science -
hands-on tutorial
Plotting in Python
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Advanced R in Galaxy
•• intermediateSoftware engineering Foundations of Data Science R -
hands-on tutorial
R basics in Galaxy
• beginnerSoftware engineering Foundations of Data Science R interactive-tools -
hands-on tutorial
Introduction to Python
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Advanced Python
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
slides
Scripting Galaxy using the API and BioBlend
• beginnerSoftware engineering Development in Galaxy -
slides
Tool Dependencies and Conda
• beginnerSoftware engineering Development in Galaxy -
slides
Tool development and integration into Galaxy
• beginnerSoftware engineering Development in Galaxy