Training materials
Keywords: 10x or Reproducibility
and Contributors: John Sundh or Daniel Faria or Lieven Clement or Pavankumar Videm
-
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Pre-processing of 10X Single-Cell ATAC-seq Datasets
• beginner10x Single Cell epigenetics -
hands-on tutorial
Inferring single cell trajectories with Monocle3 (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
Training materials
NBIS Reproducible research course