Training materials
Resource type: hands-on tutorial
and Contributors: John Sundh or Alvaro Gonzalez or Beatriz Serrano-Solano or Clair Castle or Laura Leroi or Subina Mehta or Wendi Bacon
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Scanpy Parameter Iterator
• beginnerSingle Cell -
hands-on tutorial
Inferring single cell trajectories with Monocle3 (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Removing the effects of the cell cycle
• beginner10x Single Cell -
hands-on tutorial
Hands-on for 'Creating the bulk RNA-seq dataset for deconvolution' tutorial
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hands-on tutorial
Hands-on for 'Creating the single-cell RNA-seq reference dataset for deconvolution' tutorial
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hands-on tutorial
Inferring single cell trajectories with Monocle3
• beginnerTranscriptomics 10x Single Cell paper-replication -
hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateassembly quality control -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote -
hands-on tutorial
Genome annotation with Funannotate
•• intermediateGenome Annotation eukaryote gmod jbrowse1