Training materials
Contributors: Federico Bianchini or John Sundh or Alex Ostrovsky or Dr. Paul Shaw or Nicola Soranzo or Pavankumar Videm or The Gulbenkian Training Programme in Bioinforma... or Yvan Le Bras or Yvonne Kallberg
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
GTPB/ABSTAT18
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GTPB/IBIP19
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GTPB/PDA19
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GTPB/ELB19F
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GTPB/PSLS20
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GTPB/PSLS22