Training materials
Contributors: @posit-pbc or Carina Silva or Janick Mathys or Mehmet Tekman or Munazah Andrabi or Pavankumar Videm or Teaching materials at the Harvard Chan Bioinfor... or The Carpentries
-
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
wesm/pydata-book
-
hands-on tutorial
Sequence data submission to ENA
• beginnerENA FAIR FAIR Data, Workflows, and Research -
wch/rgcookbook
-
hbctraining/BBS230B_2023
-
hbctraining/RNA-seq-CB321qc_2022