Training materials
Contributors: @posit-pbc or Anna Syme or Delphine Lariviere or Dr. Bernard de Bono or Emily Angiolini or Hana Pergl Sustkova or Markus Englund or Martin Strauch or Prof. Tom Freeman
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hands-on tutorial
Chloroplast genome assembly
• beginnerSequence assembly Assembly jbrowse1 nanopore plants -
hands-on tutorial
VGP assembly pipeline: Step by Step
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
VGP assembly pipeline - short version
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
Making sense of a newly assembled genome
• beginnerSequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Unicycler Assembly
• beginnerSequence assembly Genomics Microbiology Assembly microgalaxy prokaryote -
hands-on tutorial
Use Jupyter notebooks in Galaxy
• beginnerUsing Galaxy and Managing your Data -
hands-on tutorial
Hands-on for 'A short introduction to Galaxy' tutorial
• beginnerintroduction español -
slides
Slides for 'Essential genes detection with Transposon insertion sequencing' tutorial
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slides
Genome annotation with Prokka
• beginnerGenome Annotation prokaryote -
slides
Deeper look into Genome Assembly algorithms
•• intermediateSequence assembly Assembly