Training materials
Contributors: @posit-pbc or Anatole Chessel or Andrea Argentini or Björn Grüning or Christopher Barnett or Martin Strauch or Mateusz Kuzak or Matthias Fahrner or Patricia Palagi or Pavankumar Videm or Prof. Tom Freeman or The Carpentries Lab
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hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
wesm/pydata-book
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wch/rgcookbook
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carpentries-lab/metagenomics-organization
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carpentries-lab/metagenomics-shell
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carpentries-lab/metagenomics-R