Training materials
Content provider: Australian BioCommons or SIB Swiss Institute of Bioinformatics
and Keywords: FAIR or Genome curation or Populus-tremula or Workflows or life-sciences
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Make your research FAIRer with Quarto, GitHub and Zenodo
• beginnerFAIR data management reproducible research -
Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
WORKSHOP: Translating workflows into Nextflow with Janis
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WORKSHOP: Unlocking nf-core - customising workflows for your research
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WEBINAR: Pro tips for scaling bioinformatics workflows to HPC
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Video, E-learning
FAIRification of external terminologies
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Clinical data Semantic Framework FAIR Terminology Ontology Versioning of Terminology -
WORKSHOP: Make your bioinformatics workflows findable and citable
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WORKSHOP: RNA-Seq: reads to differential genes and pathways
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WEBINAR: Here's one we prepared earlier: (re)creating bioinformatics methods and workflows with Galaxy Australia
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Video, E-Learning
How to create a concept for the SPHN Dataset
• beginnerComputer science Data management FAIR data Medical informatics Design Standardisation and normalisation Clinical data Semantic Framework FAIR Concepts design Ontology Semantic inheritance SNOMED CT Conceptualization