Training materials
Authors: Wolfgang Maier
and Contributors: Armin Fuchs or Jason Williams or Martina Kutmon or Michael Krone or Ms. Yo Yehudi or Prof. Tom Freeman or Teaching materials at the Harvard Chan Bioinfor... or Wolfgang Maier
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hands-on tutorial
Avian influenza viral strain analysis from gene segment sequencing data
•• intermediateGenetic variation Variant Analysis one-health virology -
hands-on tutorial
Somatic Variant Discovery from WES Data Using Control-FREEC
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Exome sequencing data analysis for diagnosing a genetic disease
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Mapping and molecular identification of phenotype-causing mutations
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
•• intermediateGenetic variation Variant Analysis covid19 one-health virology -
hands-on tutorial
Identification of somatic and germline variants from tumor and normal sample pairs
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Trio Analysis using Synthetic Datasets from RD-Connect GPAP
• beginnerGenetic variation Variant Analysis cyoa -
hands-on tutorial
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
•• intermediateSequence assembly Assembly covid19 -
hands-on tutorial
Pre-processing of Single-Cell RNA Data
• beginnerTranscriptomics Single Cell -
hands-on tutorial
Automating Galaxy workflows using the command line
• beginnerUsing Galaxy and Managing your Data covid19 variant-analysis workflows
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