Training materials
Authors: Wendi Bacon
and Contributors: Bioinformatics, Rockefeller University or Dr. Konstantinos Sidiropoulos or Instituto Gulbenkian de Ciência or John Chilton or Mehmet Tekman or Nicola Mulder or Teresa Attwood
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hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Hands-on for 'Creating the bulk RNA-seq dataset for deconvolution' tutorial
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hands-on tutorial
Hands-on for 'Creating the single-cell RNA-seq reference dataset for deconvolution' tutorial
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hands-on tutorial
Hands-on for 'Trajectory Analysis using Python (Jupyter Notebook) in Galaxy' tutorial
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hands-on tutorial
Pre-processing of 10X Single-Cell RNA Datasets
• beginnerTranscriptomics 10x Single Cell -
hands-on tutorial
Bulk RNA Deconvolution with MuSiC
• beginnerTranscriptomics Single Cell transcriptomics -
slides
Plates, Batches, and Barcodes
• beginnerTranscriptomics Single Cell