Training materials
Authors: Simon Gladman
and Contributors: Anton Nekrutenko or Beatriz Serrano-Solano or Dr. Martin Graham or Mark Beaumont or Simon Gladman or Wolfgang Maier
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slides
Server Maintenance: Cleanup, Backup, and Restoration
• beginnerGalaxy Server administration -
hands-on tutorial
M. tuberculosis Variant Analysis
•• intermediateGenetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote tuberculosis -
hands-on tutorial
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Genome annotation with Prokka
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Unicycler Assembly
• beginnerSequence assembly Genomics Microbiology Assembly microgalaxy prokaryote -
hands-on tutorial
An Introduction to Genome Assembly
• beginnerSequence assembly Assembly -
hands-on tutorial
De Bruijn Graph Assembly
• beginnerSequence assembly Assembly -
hands-on tutorial
Reference Data with CVMFS without Ansible
• beginnerGalaxy Server administration -
hands-on tutorial
Upgrading Galaxy
• beginnerGalaxy Server administration ansible -
hands-on tutorial
Reference Data with CVMFS
• beginnerGalaxy Server administration ansible git-gat