Training materials
Authors: Simon Gladman
and Contributors: Anna Syme or Daniel Blankenberg or Delphine Lariviere or Erik Garrison or Mattias Strömberg or Mikko Rautiainen or The Carpentries Lab
-
hands-on tutorial
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Genome annotation with Prokka
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Unicycler Assembly
• beginnerSequence assembly Genomics Microbiology Assembly microgalaxy prokaryote -
slides
Genome annotation with Prokka
• beginnerGenome Annotation prokaryote -
slides
Deeper look into Genome Assembly algorithms
•• intermediateSequence assembly Assembly -
slides
Unicycler Assembly
• beginnerSequence assembly Assembly prokaryote -
slides
Reference Data with CVMFS
• beginnerGalaxy Server administration