Training materials
Authors: Helena Rasche
and Contributors: Charlotte Soneson or Clemens Blank or Dr. Nils Gehlenborg or Helena Rasche or John Davis or Lounès Chikhi or Saskia Hiltemann
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hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
hands-on tutorial
Use Apptainer containers for running Galaxy jobs
• beginnerGalaxy Server administration ansible git-gat jobs -
hands-on tutorial
Deploying a Beacon v1 in Galaxy
• beginnerGalaxy Server administration beacon ga4gh git-gat -
slides
Server Maintenance: Cleanup, Backup, and Restoration
• beginnerGalaxy Server administration -
slides
Galaxy from an administrator's point of view
• beginnerGalaxy Server administration -
hands-on tutorial
Trio Analysis using Synthetic Datasets from RD-Connect GPAP
• beginnerGenetic variation Variant Analysis cyoa -
hands-on tutorial
Genomic Data Visualisation with JBrowse
• beginnerVisualisation gmod jbrowse1 -
hands-on tutorial
Visualisation with Circos
• beginnerVisualisation -
hands-on tutorial
Refining Genome Annotations with Apollo (prokaryotes)
•• intermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Galaxy Admin Training
• beginnerTeaching and Hosting Galaxy training