Training materials
Scientific topics: Differential gene expression profiling or Software engineering
and Authors: Janick Mathys or Lisanna Paladin or Simon Bray or The Carpentries or The Gulbenkian Training Programme in Bioinforma... or erxleben
-
slides
Bioinformatics Data Types and Databases
• beginnerSoftware engineering Foundations of Data Science -
hands-on tutorial
One protein along the UniProt page
• beginnerSoftware engineering Foundations of Data Science -
hands-on tutorial
Learning about one gene across biological resources and formats
• beginnerSoftware engineering Foundations of Data Science -
hands-on tutorial
R introduction
• beginnerR script Software engineering data visualisation programming -
hands-on tutorial
Bulk RNASeq analysis
•• intermediateTranscriptomics Gene expression Differential gene expression profiling Expression analysis Data analysis NGS RNASeq transcriptomics -
hands-on tutorial
Hands-on for 'Python - Coding Style' tutorial
•• intermediatedata-science jupyter-notebook -
hands-on tutorial
Hands-on for 'Virtual Environments For Software Development' tutorial
•• intermediatedata-science jupyter-notebook -
hands-on tutorial
Hands-on for 'Conda Environments For Software Development' tutorial
•• intermediatedata-science conda jupyter-notebook -
hands-on tutorial
Hands-on for 'Python - Testing' tutorial
•• intermediatedata-science jupyter-notebook -
hands-on tutorial
Contributing to BioBlend as a developer
• beginnerSoftware engineering Development in Galaxy