Training materials
Contributors: Erasmus+ Programme
and Authors: Helena Rasche or Jenny Drnevich @jenny or Jessica Kirkpatrick krkptrc2@illinois.edu or Lucille Delisle or malloryfreeberg or pajanne
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hands-on tutorial
Genomic Data Visualisation with JBrowse
•• intermediateVisualisation gmod jbrowse1 -
hands-on tutorial
Refining Genome Annotations with Apollo (prokaryotes)
•• intermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
CLI Educational Game - Bashcrawl
•• intermediateSoftware engineering Foundations of Data Science bash game jupyter-notebook -
hands-on tutorial
Advanced CLI in Galaxy
•• intermediateSoftware engineering Foundations of Data Science bash jupyter-notebook -
hands-on tutorial
CLI basics
• beginnerSoftware engineering Foundations of Data Science bash jupyter-notebook -
hands-on tutorial
SQL Educational Game - Murder Mystery
•• intermediateSoftware engineering Foundations of Data Science SQL game jupyter-notebook -
hands-on tutorial
dplyr & tidyverse for data processing
••• advancedSoftware engineering Foundations of Data Science R jupyter-notebook rmarkdown-notebook -
slides
Circos
• beginnerVisualisation -
slides
Refining Genome Annotations with Apollo
• beginnerGenome Annotation prokaryote