Training materials
Scientific topics: Differential gene expression profiling or Software engineering
and Authors: Fotis E. Psomopoulos or Janick Mathys or Lisanna Paladin or Simon Bray or The Carpentries or The Gulbenkian Training Programme in Bioinforma... or erxleben
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hands-on tutorial
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
slides
Bioinformatics Data Types and Databases
• beginnerSoftware engineering Foundations of Data Science -
hands-on tutorial
One protein along the UniProt page
• beginnerSoftware engineering Foundations of Data Science -
hands-on tutorial
Learning about one gene across biological resources and formats
• beginnerSoftware engineering Foundations of Data Science -
hands-on tutorial
R introduction
• beginnerR script Software engineering data visualisation programming -
hands-on tutorial
Bulk RNASeq analysis
•• intermediateTranscriptomics Gene expression Differential gene expression profiling Expression analysis Data analysis NGS RNASeq transcriptomics -
hands-on tutorial
Python - Coding Style
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Virtual Environments For Software Development
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Conda Environments For Software Development
•• intermediateSoftware engineering Foundations of Data Science conda jupyter-notebook -
hands-on tutorial
Python - Testing
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook