Training materials
Target audience: Students or beginner bioinformaticians
and Authors: Enis Afgan or Helena Rasche or Maria Doyle or Mateo Boudet or Pavankumar Videm or Ray Sajulga
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hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
hands-on tutorial
Data Manipulation Olympics - SQL
• beginnerSoftware engineering Foundations of Data Science cyoa jupyter-notebook sql -
hands-on tutorial
Data Manipulation Olympics - JQ
• beginnerSoftware engineering Foundations of Data Science cyoa json -
hands-on tutorial
Metatranscriptomics analysis using microbiome RNA-seq data
• beginnerMetagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy -
hands-on tutorial
Metatranscriptomics analysis using microbiome RNA-seq data (short)
• beginnerMetagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy -
hands-on tutorial
Ploting a Microbial Genome with Circos
• beginnerVisualisation -
slides
Whole transcriptome analysis of Arabidopsis thaliana
• beginnerTranscriptomics -
slides
Visualisations in Galaxy
• beginnerVisualisation -
slides
JBrowse
• beginnerVisualisation -
slides
Introduction to Genome Annotation
•• intermediateGenome Annotation