Training materials
Authors: Eija Korpelainen or Florian Christoph Sigloch or Jan Slifka or Kaivan Kamali or Marius van den Beek or Mehmet Tekman or bebatut or erasche
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hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
ekorpela/cloud-vm-workshop
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hands-on tutorial
Monitoring Galaxy and Pulsar with Sentry
• beginnerGalaxy Server administration ansible git-gat -
hands-on tutorial
Use Apptainer containers for running Galaxy jobs
• beginnerGalaxy Server administration ansible git-gat jobs -
Training materials, Series of videos
Visium data analysis (spatially resolved transcriptomics) 2022
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hands-on tutorial
Comparing inferred cell compositions using MuSiC deconvolution
• beginnerSingle Cell transcriptomics -
hands-on tutorial
Hands-on for 'Creating the bulk RNA-seq dataset for deconvolution' tutorial
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hands-on tutorial
Hands-on for 'Creating the single-cell RNA-seq reference dataset for deconvolution' tutorial
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hands-on tutorial
Inferring single cell trajectories with Scanpy (Python)
• beginnerTranscriptomics 10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
• beginnerGenetic variation Variant Analysis covid19 one-health virology