Training materials
Difficulty level: Intermediate
and Authors: Egon Willighagen or Eija Korpelainen or Friederike Ehrhart or Jared Simpson or Julie Sullivan or Maria Victoria . or Personalized Health Informatics Group or Radhika Khetani @radhika or nekrut
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Blog post
Making BridgeDb Derby files with Groovy
•• intermediateBridgeDb Groovy -
Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF Knowledge graph GraphDB RDF graph validation -
Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Python R GraphDB -
Tutorial
Adding nanomaterial data
•• intermediateToxicology Database management ontologies enanomapper RDF -
Documentation
InterMine operator manual
•• intermediateData integration Data analysis Data publishing FAIR -
Entering and analysing nano safety data
•• intermediateontologies enanomapper