Training materials
Authors: Donny Vrins or Egon Willighagen or Erasmus+ Programme or Gary Bader or Jessica Kirkpatrick krkptrc2@illinois.edu or John Chilton or Mathieu Bourgey or Teaching materials at the Harvard Chan Bioinfor... or Wendi Bacon
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hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
Blog post
Making BridgeDb Derby files with Groovy
•• intermediateBridgeDb Groovy -
hbctraining/BBS230B_2023
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hbctraining/RNA-seq-CB321qc_2022
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hbctraining/Peak_analysis_workshop
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hbctraining/reproducibility-tools
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hbctraining/rnaseq-cb321
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hbctraining/variant_analysis