Training materials
Authors: Delphine Lariviere or Frederik Coppens @frcop or Jessica Kirkpatrick krkptrc2@illinois.edu or Nicola Soranzo
and Contributors: Björn Grüning or Dannon Baker or Simon Gladman
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hands-on tutorial
Unicycler Assembly
• beginnerSequence assembly Genomics Microbiology Assembly microgalaxy prokaryote -
hands-on tutorial
Galaxy Basics for genomics
• beginnerIntroduction to Galaxy Analyses -
slides
Scripting Galaxy using the API and BioBlend
• beginnerSoftware engineering Development in Galaxy -
slides
Tool Dependencies and Conda
• beginnerSoftware engineering Development in Galaxy -
slides
Tool development and integration into Galaxy
• beginnerSoftware engineering Development in Galaxy -
slides
Deeper look into Genome Assembly algorithms
•• intermediateSequence assembly Assembly -
slides
Unicycler Assembly
• beginnerSequence assembly Assembly prokaryote -
slides
Connecting Galaxy to a compute cluster
• beginnerGalaxy Server administration features -
slides
Galaxy Tool Management with Ephemeris
• beginnerGalaxy Server administration