Training materials
Scientific topics: Transcriptome
and Authors: David Wishart or Instituto Gulbenkian de Ciência or Marta Lloret Llinares or Matthias Fahrner or Sundeep Agarwal or The Gulbenkian Training Programme in Bioinforma... or Wendi Bacon
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GTPB/ELB19F
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GTPB/ADER19F
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hands-on tutorial
Combining single cell datasets after pre-processing
• beginnerTranscriptomics 10x Single Cell paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy (Python)
• beginnerTranscriptomics 10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Hands-on for 'Trajectory Analysis using Python (Jupyter Notebook) in Galaxy' tutorial
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hands-on tutorial
Pre-processing of 10X Single-Cell RNA Datasets
• beginnerTranscriptomics 10x Single Cell -
hands-on tutorial
Generating a single cell matrix using Alevin
• beginnerTranscriptomics 10x Single Cell paper-replication -
hands-on tutorial
Bulk RNA Deconvolution with MuSiC
• beginnerTranscriptomics Single Cell transcriptomics -
hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy
• beginnerTranscriptomics 10x Single Cell paper-replication -
slides
Plates, Batches, and Barcodes
• beginnerTranscriptomics Single Cell