Training materials
Authors: David Wishart or Emma Griffiths or Maria Levchenko or Monique Zahn or Teaching materials at the Harvard Chan Bioinfor... or UC Davis Bioinformatics Core Training Page or Wendi Bacon or erxleben
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hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
e-learning
Identifiers in Bioinformatics
• beginnerData management Data identity and mapping Data handling Data retrieval Database search Interoperability Identifiers Standards -
e-learning
Interoperable File Formats
• beginnerData management Formatting Interoperability File formats Standards -
ucdavis-bioinformatics-training/2021-August-Iso-Seq
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ucdavis-bioinformatics-training/2021-May-Microbial-Community-Analysis
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ucdavis-bioinformatics-training/2023-June-Advanced-Topics-in-Single-Cell-RNA-Seq-VDJ
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ucdavis-bioinformatics-training/2023-September-Introduction-to-the-Command-Line-for-Bioinformatics
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ucdavis-bioinformatics-training/2023-July-Introduction-To-Python-For-Bioinformatics