Training materials
Authors: Daniel Blankenberg or Egon Willighagen or Malachi Griffith or Maria Lehtivaara or Wendi Bacon or posit-conf-2023
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hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
slides
Reference Genomes in Galaxy
• beginnerGalaxy Server administration -
slides
Gearing towards production
• beginnerGalaxy Server administration -
Blog post
Making BridgeDb Derby files with Groovy
•• intermediateBridgeDb Groovy -
posit-conf-2023/teach-ds-masterclass
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posit-conf-2023/managing-os-project
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posit-conf-2023/shiny-r-ui
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posit-conf-2023/python-modeling