Training materials
Licence: Creative Commons Attribution 4.0 International
and Authors: Daniel Blankenberg or Deshpande, Nandan (orcid: 0000-0002-0324-8728) or Jeff Xia or Lucille Delisle or Maria Levchenko or Martin Morgan or allegra.via Via
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slides
Reference Genomes in Galaxy
• beginnerGalaxy Server administration -
slides
Gearing towards production
• beginnerGalaxy Server administration -
mtmorgan/HCABiocTraining
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WEBINAR: Getting started with RNAseq: Transforming raw reads into biological insights
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hands-on tutorial
Server Maintenance: Cleanup, Backup, and Restoration
• beginnerDatabase management Informatics Data management Galaxy Server administration ansible deploying git-gat -
WORKSHOP: RNA-Seq: reads to differential genes and pathways
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WEBINAR: Portable, reproducible and scalable bioinformatics workflows using Nextflow and Pawsey Nimbus Cloud
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WORKSHOP: Working with genomics sequences and features in R with Bioconductor
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hands-on tutorial
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
• beginnerGenetic variation Variant Analysis covid19 one-health virology -
hands-on tutorial
ATAC-Seq data analysis
• beginnerEpigenomics Epigenetics