Training materials
Authors: Cristóbal Gallardo or Erasmus+ Programme or Jessica Kirkpatrick krkptrc2@illinois.edu or Mehmet Tekman or Melanie Föll or Michelle Brazas or Simon Andrews
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hands-on tutorial
Genome-wide alternative splicing analysis
••• advancedTranscriptomics alternative splicing isoform switching -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
16S Microbial analysis with Nanopore data
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy nanopore plants -
hands-on tutorial
ERGA post-assembly QC
• beginnerSequence assembly Assembly QC animals assembly genome plants -
slides
Identification of non-canonical ORFs and their potential biological function
• beginnerTranscriptomics -
slides
Whole transcriptome analysis of Arabidopsis thaliana
• beginnerTranscriptomics -
slides
Introduction to proteomics, protein identification, quantification and statistical modelling
• beginnerProteomics -
hands-on tutorial
Comparing inferred cell compositions using MuSiC deconvolution
• beginnerSingle Cell transcriptomics -
hands-on tutorial
Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution
• beginnerSingle Cell data management transcriptomics -
hands-on tutorial
Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution
• beginnerSingle Cell data management