Training materials
Authors: Christophe Klopp or Nathan Dunn or Nicola Soranzo or Wolfgang Maier
and Contributors: Anthony Bretaudeau or Björn Grüning or Harald Barsnes
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slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Exome sequencing data analysis for diagnosing a genetic disease
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Hands-on for 'Refining Genome Annotations with Apollo (prokaryotes)' tutorial
•• intermediategenome-annotation prokaryote -
hands-on tutorial
Galaxy Basics for genomics
• beginnerIntroduction to Galaxy Analyses -
hands-on tutorial
From peaks to genes
• beginnerIntroduction to Galaxy Analyses -
slides
Slides for 'Refining Genome Annotations with Apollo' tutorial
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slides
Tool Dependencies and Conda
• beginnerSoftware engineering Development in Galaxy -
slides
Tool development and integration into Galaxy
• beginnerSoftware engineering Development in Galaxy -
slides
Slides for 'Connecting Galaxy to a compute cluster' tutorial
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slides
Options for using Galaxy
• beginnerIntroduction to Galaxy Analyses