Training materials
Resource type: hands-on tutorial
and Authors: Christoph Stritt or Florence Combes or Florian Christoph Sigloch or Jessica Kirkpatrick krkptrc2@illinois.edu or John Chilton or Mehmet Tekman or pajanne
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hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Comparing inferred cell compositions using MuSiC deconvolution
• beginnerSingle Cell transcriptomics -
hands-on tutorial
Hands-on for 'Creating the bulk RNA-seq dataset for deconvolution' tutorial
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hands-on tutorial
Hands-on for 'Creating the single-cell RNA-seq reference dataset for deconvolution' tutorial
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hands-on tutorial
Inferring single cell trajectories with Scanpy (Python)
• beginnerTranscriptomics 10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Debugging Galaxy
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Contributing a New Feature to Galaxy Core
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Writing Automated Tests for Galaxy
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Hands-on for 'Trajectory Analysis using Python (Jupyter Notebook) in Galaxy' tutorial
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hands-on tutorial
Pre-processing of 10X Single-Cell RNA Datasets
• beginnerTranscriptomics 10x Single Cell