Training materials
Difficulty level: Beginner
and Authors: Christof De Bo or Daniel Faria or Federico Bianchini or Guillaume Bourque or Jessica Kirkpatrick krkptrc2@illinois.edu or Julia Jakiela
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Slides
Life Sciences Research Data Management 2024 Course by ELIXIR Norway
• beginnerData management Data curation and archival Data handling Data deposition Data retrieval Data management planning -
hands-on tutorial
Converting between common single cell data formats
• beginnerSingle Cell data import data management -
hands-on tutorial
Importing files from public atlases
• beginnerSingle Cell data import data management -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Scanpy Parameter Iterator
• beginnerSingle Cell -
slides
Trajectory analysis
• beginnerSingle Cell -
hands-on tutorial
Data management in Medicinal Chemistry
• beginnerComputational chemistry computational-chemistry data-management fair medicinal-chemistry -
hands-on tutorial
REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data
• beginnerImaging bioimaging data management fair -
hands-on tutorial
FAIR Bioimage Metadata
• beginnerImaging bioimaging data management fair