Training materials
Authors: Charlotte Soneson @charlotte, charlottesoneson@... or Christopher Barnett or Daniel Faria or Malachi Griffith or Matthias Fahrner or The Carpentries or Wendi Bacon
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hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
slides
Introduction to Galaxy
• beginnerIntroduction to Galaxy Analyses -
Ready for BioData Management? Intensive Course
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hands-on tutorial
Comparing inferred cell compositions using MuSiC deconvolution
• beginnerSingle Cell transcriptomics -
hands-on tutorial
Hands-on for 'Creating the bulk RNA-seq dataset for deconvolution' tutorial
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hands-on tutorial
Hands-on for 'Creating the single-cell RNA-seq reference dataset for deconvolution' tutorial
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Course materials, Training materials
"Ready for BioData Management?" Training Data Stewards for Life Sciences