Training materials
Authors: Canadian Bioinformatics Workshops or Data Carpentry or Dominik Frantisek Bucik or Erasmus+ Programme or Jessica Kirkpatrick krkptrc2@illinois.edu or Simon Andrews or The Carpentries or Wendi Bacon or Youri Hoogstrate
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hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
bioinformatics-ca/AUR_2021
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bioinformatics-ca/INR_2021
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bioinformatics-ca/PNA_2021
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bioinformatics-ca/RNA_2021
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bioinformatics-ca/MIC_2021
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bioinformatics-ca/EPI_2021