Training materials
Authors: CRUK CI Bioinformatics Core or Denise Slenter or Malachi Griffith or Martin Morgan or Mijke Jetten or Praveen Kumar or Simon Andrews or Wendi Bacon
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hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Metatranscriptomics analysis using microbiome RNA-seq data
• beginnerMetagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy -
hands-on tutorial
Metatranscriptomics analysis using microbiome RNA-seq data (short)
• beginnerMetagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy -
Presentation
Workshop FAIR & Data stewardship for the ITN NUTRIOME project (2024)
• beginnerNutritional science Data management FAIR data Data handling Analysis data stewardship data life cycle Training FAIR Nutrition -
Training materials
ELITMa Module "Data Management Strategy" (Finland 28-29 June 2023)
• beginnerResearch Data Management RDM Strategy Training -
bioinformatics-core-shared-training/nextflow_september_2021
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bioinformatics-core-shared-training/Bulk_RNASeq_Course_Nov21
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bioinformatics-core-shared-training/r-basics