Training materials
Difficulty level: Beginner
and Authors: Boris Steipe or Egon Willighagen or Fotis E. Psomopoulos or Jan Slifka or Maria Levchenko or Teaching materials at the Harvard Chan Bioinfor... or Wendi Bacon or nekrut
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hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Binning of metagenomic sequencing data
• beginnerMetagenomics Microbial ecology Sequence assembly Microbiome binning metagenomics microgalaxy -
hands-on tutorial
Train-the-Trainer: putting it all together
• beginnerTeaching and Hosting Galaxy training -
hands-on tutorial
Asynchronous training
• beginnerTeaching and Hosting Galaxy training -
hands-on tutorial
Comparing inferred cell compositions using MuSiC deconvolution
• beginnerSingle Cell transcriptomics -
hands-on tutorial
Teaching online
• beginnerTeaching and Hosting Galaxy training -
hands-on tutorial
Hybrid training
• beginnerTeaching and Hosting Galaxy training -
hands-on tutorial
Motivation and Demotivation
• beginnerTeaching and Hosting Galaxy training