Training materials
Difficulty level: Beginner
and Authors: Boris Steipe or Brian Haas or David Wishart or Mehmet Tekman or Pratik Jagtap or bgruening
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slides
Introduction to metatranscriptomics
• beginnerMetagenomics Microbial ecology Microbiome -
hands-on tutorial
Pre-processing of Single-Cell RNA Data
• beginnerTranscriptomics Single Cell -
hands-on tutorial
Downstream Single-cell RNA analysis with RaceID
• beginnerTranscriptomics Single Cell -
hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data (short)' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
hands-on tutorial
Understanding Barcodes
• beginnerTranscriptomics Single Cell -
slides
Plates, Batches, and Barcodes
• beginnerTranscriptomics Single Cell -
slides
Clustering 3K PBMCs with Scanpy
• beginnerTranscriptomics Single Cell -
slides
Dealing with Cross-Contamination in Fixed Barcode Protocols
• beginnerTranscriptomics Single Cell