Training materials
Status: Active
and Authors: Blaž Zupan or Egon Willighagen or Gary Van Domselaar or Harrison, Paul (orcid: 0000-0002-3980-268X) or Malachi Griffith or Morgan, Steven (orcid: 0000-0001-6038-6126) or Vasundra Touré
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Bioinformatics, Data Science
Teaching Bioinformatics through the Analysis of SARS-CoV-2
• beginnerBioinformatics SARS-CoV-2 assignments -
Blog post
Making BridgeDb Derby files with Groovy
•• intermediateBridgeDb Groovy -
Creating InChIKeys for IUPAC names
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Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
WORKSHOP: RNA-Seq: reads to differential genes and pathways
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WORKSHOP: Single cell RNAseq analysis in R
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Video, E-learning
FAIR principles in practice for health data
• beginnerComputer science Data management FAIR data Medical informatics Standardisation and normalisation Design Clinical data RDF Knowledge graph Semantic framework FAIR Findability Accessibility Interoperability Reusability -
WORKSHOP: Hybrid de novo genome assembly
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WORKSHOP: Working with genomics sequences and features in R with Bioconductor
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WORKSHOP: Online data analysis for biologists
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