Training materials
Authors: Björn Grüning or Jessica Kirkpatrick krkptrc2@illinois.edu or Kaivan Kamali or Marius van den Beek or Marta Lloret Llinares or Nicola Soranzo or bebatut
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Learning pathway
Version control with Git
•• intermediateSoftware engineering Open science Version control -
hands-on tutorial
Hands-on for 'Use Apptainer containers for running Galaxy jobs' tutorial
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slides
Slides for 'Server Maintenance: Cleanup, Backup, and Restoration' tutorial
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slides
Slides for 'Galaxy from an administrator's point of view' tutorial
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hands-on tutorial
Hands-on for 'From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis' tutorial
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hands-on tutorial
Hands-on for 'Exome sequencing data analysis for diagnosing a genetic disease' tutorial
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hands-on tutorial
Hands-on for 'Calling variants in diploid systems' tutorial
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hands-on tutorial
Hands-on for 'Scripting Galaxy using the API and BioBlend' tutorial
• beginnerdev jupyter-notebook -
hands-on tutorial
Hands-on for 'JavaScript plugins' tutorial
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hands-on tutorial
Hands-on for 'Galaxy Webhooks' tutorial