Training materials
Authors: Björn Grüning or Dayane Araujo or Egon Willighagen or Korbinian Bösl or Mehmet Tekman or Wendi Bacon or erasche or pajanne
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hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Genome Annotation
• beginnerGenome Annotation prokaryote work-in-progress -
hands-on tutorial
Running a workshop as instructor
• beginnerTeaching and Hosting Galaxy training -
slides
Galaxy Monitoring
• beginnerGalaxy Server administration -
slides
Advanced customisation of a Galaxy instance
• beginnerGalaxy Server administration -
Slides
Navigating Licensing in Bioinformatics: Software and Data Perspectives
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Blog post
Making BridgeDb Derby files with Groovy
•• intermediateBridgeDb Groovy -
ELIXIR-Norway-Training/DMP-writing-workshop