Training materials
Authors: Björn Grüning or CRUK CI Bioinformatics Core or Denise Slenter or Lucille Delisle or Malachi Griffith or Simon Andrews or Wendi Bacon
-
hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Genome Annotation
• beginnerGenome Annotation prokaryote work-in-progress -
hands-on tutorial
Running a workshop as instructor
• beginnerTeaching and Hosting Galaxy training -
slides
Galaxy Monitoring
• beginnerGalaxy Server administration -
slides
Advanced customisation of a Galaxy instance
• beginnerGalaxy Server administration -
bioinformatics-core-shared-training/nextflow_september_2021
-
bioinformatics-core-shared-training/Bulk_RNASeq_Course_Nov21
-
bioinformatics-core-shared-training/r-basics