Training materials
Authors: Bioinformatics, Rockefeller University or Cristóbal Gallardo or Lucille Delisle or Malachi Griffith or Michelle Brazas or Pratik Jagtap or nekrut or shiltemann
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hands-on tutorial
16S Microbial analysis with Nanopore data
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy nanopore -
hands-on tutorial
Metatranscriptomics analysis using microbiome RNA-seq data
• beginnerMetagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy -
hands-on tutorial
Metatranscriptomics analysis using microbiome RNA-seq data (short)
• beginnerMetagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy -
hands-on tutorial
ERGA post-assembly QC
• beginnerSequence assembly Assembly -
slides
Whole transcriptome analysis of Arabidopsis thaliana
• beginnerTranscriptomics -
slides
Identification of non-canonical ORFs and their potential biological function
• beginnerTranscriptomics -
slides
Introduction to metatranscriptomics
• beginnerMetagenomics Microbial ecology Microbiome -
RockefellerUniversity/RU_tidyverse_core
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RockefellerUniversity/RU_reproducibleR
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RockefellerUniversity/IGV_course