Training materials
Difficulty level: Intermediate
and Authors: Bert Meerman or Egon Willighagen or Janick Mathys or Nicola Soranzo or Personalized Health Informatics Group or Robin Engler
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UNIX Shell Scripting in Life Sciences
•• intermediateprogramming training mark ibberson group -
Blog post
Making BridgeDb Derby files with Groovy
•• intermediateBridgeDb Groovy -
Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
Data Analysis and Representation in Python
•• intermediateprogramming,data analysis,training,data visualisation,torsten schwede & thierry sengstag group,mark ibberson group programming,training,torsten schwede & thierry sengstag group,mark ibberson group -
e-learning
High Performance Computing in Life Sciences
•• intermediateComputational biology High performance computing Data storage -
hands-on tutorial
Bulk RNASeq analysis
•• intermediateTranscriptomics Gene expression Differential gene expression profiling Expression analysis Data analysis NGS RNASeq transcriptomics -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF Knowledge graph GraphDB RDF graph validation -
Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Python R GraphDB -
Training materials
Essential Steps of the FAIRification Process
•• intermediateFAIR data stewardship metadata linked data -
Tutorial
Adding nanomaterial data
•• intermediateToxicology Database management ontologies enanomapper RDF
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