Training materials
Authors: Bazante Sanders or Delphine Lariviere or John Chilton or Pratik Jagtap or pajanne
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hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Metatranscriptomics analysis using microbiome RNA-seq data
• beginnerMetagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy -
hands-on tutorial
Metatranscriptomics analysis using microbiome RNA-seq data (short)
• beginnerMetagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy -
slides
Introduction to metatranscriptomics
• beginnerMetagenomics Microbial ecology Microbiome -
hands-on tutorial
Hands-on for 'Essential genes detection with Transposon insertion sequencing' tutorial
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hands-on tutorial
Debugging Galaxy
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Contributing a New Feature to Galaxy Core
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Writing Automated Tests for Galaxy
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
VGP assembly pipeline: Step by Step
•• intermediateSequence assembly Assembly VGP eukaryote pacbio