Training materials
Resource type: hands-on tutorial
and Authors: Bazante Sanders or Cristóbal Gallardo or David Christiany or Florian Heyl or Frédéric de Lamotte or allegra.via Via or blankclemens
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hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
16S Microbial analysis with Nanopore data
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy nanopore -
hands-on tutorial
CUT&RUN data analysis
• beginnerEpigenomics Epigenetics -
hands-on tutorial
ERGA post-assembly QC
• beginnerSequence assembly Assembly -
hands-on tutorial
Principles of learning and how they apply to training and teaching
• beginnerContributing to the Galaxy Training Material -
hands-on tutorial
Visualisation with Circos
• beginnerVisualisation -
hands-on tutorial
ATAC-Seq data analysis
• beginnerEpigenomics Epigenetics -
hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
VGP assembly pipeline: Step by Step
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
VGP assembly pipeline - short version
•• intermediateSequence assembly Assembly VGP eukaryote pacbio