Training materials
Difficulty level: Intermediate
and Authors: Bastian Schiffthaler @bastian or Bérénice Batut or Donny Vrins or Eija Korpelainen @eija, ekorpelainen@gmail.com or Jared Simpson or Simon Gladman or Tom Freeman or Vincent Carey
-
hands-on tutorial
Hands-on for 'Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data' tutorial
•• intermediatevariant-analysis covid19 virology one-health -
hands-on tutorial
Hands-on for 'M. tuberculosis Variant Analysis' tutorial
•• intermediatevariant-analysis prokaryote one-health -
hands-on tutorial
Hands-on for 'Python - Subprocess' tutorial
•• intermediatedata-science jupyter-notebook -
hands-on tutorial
Hands-on for 'Python - Globbing' tutorial
•• intermediatedata-science jupyter-notebook -
hands-on tutorial
Make & Snakemake
•• intermediateSoftware engineering Foundations of Data Science -
hands-on tutorial
Hands-on for 'Advanced R in Galaxy' tutorial
•• intermediatedata-science R -
slides
Deeper look into Genome Assembly algorithms
•• intermediateSequence assembly Assembly