Training materials
Scientific topics: Genetic variation or Genomics
and Authors: Bérénice Batut or Data Carpentry or Egon Willighagen or Gary Bader or Julie Sullivan or Simon Gladman or VU Amsterdam
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hands-on tutorial
Checking expected species and contamination in bacterial isolate
• beginnerEcology Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Bacterial Genome Annotation
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Whole genome sequencing Functional genomics Mobile genetic elements Genome Annotation bacteria gmod illumina jbrowse1 microgalaxy -
slides
Introduction to Variant analysis
• beginnerGenetic variation Variant Analysis -
datacarpentry/cloud-genomics
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datacarpentry/organization-genomics
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datacarpentry/genomics-r-intro
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datacarpentry/genomics-workshop
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datacarpentry/wrangling-genomics
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datacarpentry/shell-genomics