Training materials
Scientific topics: Genome annotation or Marine biology or Pathway or network or Sequencing or Software engineering
and Authors: Avans Hogeschool or Marta Lloret Llinares
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Learning pathway
Version control with Git
•• intermediateSoftware engineering Open science Version control -
hands-on tutorial
SQL with R
•• intermediateSoftware engineering Foundations of Data Science R SQL jupyter-notebook rmarkdown-notebook -
hands-on tutorial
SQL with Python
•• intermediateSoftware engineering Foundations of Data Science Python SQL jupyter-notebook -
hands-on tutorial
Make & Snakemake
•• intermediateSoftware engineering Foundations of Data Science -
hands-on tutorial
Advanced CLI in Galaxy
•• intermediateSoftware engineering Foundations of Data Science bash jupyter-notebook -
hands-on tutorial
CLI basics
• beginnerSoftware engineering Foundations of Data Science bash jupyter-notebook -
hands-on tutorial
Advanced SQL
• beginnerSoftware engineering Foundations of Data Science SQL jupyter-notebook -
hands-on tutorial
Introduction to SQL
• beginnerSoftware engineering Foundations of Data Science SQL jupyter-notebook -
hands-on tutorial
dplyr & tidyverse for data processing
••• advancedSoftware engineering Foundations of Data Science R jupyter-notebook rmarkdown-notebook -
Video
FAIR software tools
• beginnerSoftware engineering FAIR software tools Software